Full list of publications on PubMed

Significant Works

• Williams, E. M., Rosenblum, E. W., Pihlstrom, N., Llamas-Rodríguez, J., Champion, S., Frosch, M. P., & Augustinack, J. C. (2023). Pentad: A reproducible cytoarchitectonic protocol and its application to parcellation of the human hippocampus. Frontiers in neuroanatomy, 17, 1114757. https://doi.org/10.3389/fnana.2023.1114757
• Llamas-Rodríguez, J., Oltmer, J., Greve, D. N., Williams, E., Slepneva, N., Wang, R., Champion, S., Lang-Orsini, M., Fischl, B., Frosch, M. P., van der Kouwe, A. J. W., & Augustinack, J. C. (2022). Entorhinal Subfield Vulnerability to Neurofibrillary Tangles in Aging and the Preclinical Stage of Alzheimer’s Disease. Journal of Alzheimer’s disease : JAD, 87(3), 1379–1399. https://doi.org/10.3233/JAD-215567
• Oltmer, J*, Slepneva, N*, Llamas Rodriguez, J, Greve, DN, Williams, EM, Wang, R, Champion, SN, Lang-Orsini, M, Nestor, K, Fernandez-Ros, N, Fischl, B, Frosch, MP, Magnain, C, van der Kouwe, AJW, Augustinack, JC. Quantitative and Histologically Validated Measures of the Entorhinal Subfields in Ex Vivo MRI, Brain Communications, in press.
• Greve DN, Billot B, Cordero D, Hoopes A, Hoffmann M, Dalca AV, Fischl B, Iglesias JE, Augustinack JC. A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images. Neuroimage. 2021 Dec 1;244:118610. doi: 10.1016/j.neuroimage.2021.118610. PMID: 34571161
• Saygin ZM, Kliemann D, Iglesias JE, van der Kouwe AJW, Boyd E, Reuter M, Stevens A, Van Leemput K, McKee A, Frosch MP, Fischl B, Augustinack JC; Alzheimer’s Disease Neuroimaging Initiative. High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segme ntation to automatic atlas. Neuroimage. 2017 Jul 15;155:370-382. doi: 10.1016/j.neuroimage.2017.04.046. PMID:28479476
• Iglesias JE, Augustinack JC, Nguyen K, Player CM, Player A, Wright M, Roy N, Frosch MP, McKee AC, Wald LL, Fischl B, Van Leemput K; Alzheimer’s Disease Neuroimaging Initiative. A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. Neuroimage. 2015 Jul 15;115:117-37. doi: 10.1016/j.neuroimage.2015.04.042. Epub 2015 Apr 29. PMID: 2593680
• Augustinack JC, Magnain C, Reuter M, van der Kouwe AJ, Boas D, Fischl B. Neuroimage. 2014 MRI parcellation of ex vivo medial temporal lobe. Jun;93 Pt 2:252-9. doi: 10.1016/j.neuroimage.2013.05.053. PMID: 23702414
• Augustinack JC, van der Kouwe AJ. Postmortem imaging and neuropathologic correlations. Handbook of Clinical Neurology. 2016;136:1321-39.  PMID: 27430472
• Augustinack JC, van der Kouwe AJ, Salat DH, Benner T, Stevens AA, Annese J, Fischl B, Frosch MP, Corkin S. H.M.’s contributions to neuroscience: a review and autopsy studies. Hippocampus. 2014 Nov;24(11):1267-86. doi: 10.1002/hipo.22354. Epub 2014 Sep 23. PMID: 25154857
• Ziegler DA, Augustinack JC. Harnessing advances in structural MRI to enhance research on Parkinson’s disease. Imaging Med. 2013 Apr;5(2):91-94. doi: 10.2217/iim.13.8. PMID: 23687517
• Augustinack JC, Huber KE, Postelnicu, GM, Kakunoori S, van der Kouwe A, Frosch MP, Stein TS, Wald LL, Fischl B (2012) Entorhinal verrucae geometry is coincident and correlates with Alzheimer’s lesions: a combined neuropathology and high-resolution ex vivo MRI analysis Acta Neuropathologica: Volume 123, Issue 1, Pages 85-96. PMID: 22160360
• Augustinack JC, Huber KE, Stevens AA, Roy M, Frosch MP, van der Kouwe AJ, Wald LL, Van Leemput K, McKee A, Fischl B; For the Alzheimer’s Disease Neuroimaging Initiative (2012) Predicting the location of human perirhinal cortex, Brodmann’s area 35, from MRI. Neuroimage. Jan 1;64:32-42.. PMID: 22960087
• Augustinack JC, Helmer K, Huber KE, Kakunoori S, Zöllei L and Fischl B (2010) Direct visualization of the perforant pathway in the human brain with ex vivo diffusion tensor imaging. Front. Hum. Neurosci. 4:42. PMID:  20577631
• Fischl B, Stevens AA, Rajendran N, Yeo BT, Greve DN, Van Leemput K, Polimeni JR, Kakunoori S, Buckner RL, Pacheco J, Salat DH, Melcher J, Frosch MP, Hyman BT, Grant PE, Rosen BR, van der Kouwe AJ, Wiggins GC, Wald LL, Augustinack JC.  (2009) Predicting the location of entorhinal cortex from MRI. Neuroimage. Aug 1;47(1):8-17. PMID: 19376238
• Feczko E, Augustinack JC, Fischl B, Dickerson BC. An MRI-based method for measuring volume, thickness and surface area of entorhinal, perirhinal, and posterior parahippocampal cortex. Neurobiol Aging. 2009 Mar;30(3):420-31. doi: 10.1016/j.neurobiolaging.2007.07.023. PMID: 17850926
• Augustinack JC, van der Kouwe AJW, Blackwell ML, Salat DH, Wiggins CJ, Wiggins GC, Potthast A, Wald LL, Fischl BR. (2005) Detection of Entorhinal Layer II Using 7T Magnetic Resonance Imaging.  Annals of Neurology, 57 (3).  PMID: 15786476
• Augustinack JC, Sanders JL, Tsai LH, Hyman BT. Colocalization and fluorescence resonance energy transfer between cdk5 and AT8 suggests a close association in pre-neurofibrillary tangles and neurofibrillary tangles. J Neuropathol Exp Neurol. 2002 Jun;61(6):557-64. doi: 10.1093/jnen/61.6.557. PMID: 12071639
• Augustinack JC, Schneider A, Mandelkow EM, Hyman BT. Specific tau phosphorylation sites correlate with severity of neuronal cytopathology in Alzheimer’s disease. Acta Neuropathol. 2002 Jan;103(1):26-35. PMID: 11837744