2013
Ganz, Melanie; Sabuncu, Mert R and Leemput, Koen Van, An Improved Optimization Method for the Relevance Voxel Machine, 4th International Workshop on Machine Learning in Medical Imaging (MLMI), in conjunction with MICCAI, [PDF]
Aganj, Iman; Reuter, Martin; Sabuncu, Mert R and Fischl, Bruce, Symmetric non-rigid image registration via an adaptive quasi-volume-preserving constraint, Proceedings of the IEEE International Symposium on Biomedical Imaging, [PDF]
Montillo, A; Tu, J; Shotton, J; Winn, J; Iglesias, Juan Eugenio; Metaxas, D N and Criminisi, A, Entanglement and Differentiable Information Gain Maximization, Decision Forests for Computer Vision and Medical Image Analysis, [PDF]
Puonti, Oula; Iglesias, Juan Eugenio and Van Leemput, Koen, Fast, Sequence Adaptive Parcellation of Brain MR Using Parametric Models, Medical image computing and computer-assisted intervention : MICCAI, [DOI]
Juan Eugenio Iglesias, Mert Rory Sabuncu, Koen Van Leemput, A unified framework for cross-modality multi-atlas segmentation of brain MRI, Medical Image Analysis, Volume 17, Issue 8, 2013, Pages 1181-1191, ISSN 1361-8415, [DOI], [PDF]
Liu, CY., Iglesias, J.E., Tu, Z. et al. Deformable Templates Guided Discriminative Models for Robust 3D Brain MRI Segmentation. Neuroinform 11, 447–468, 2013, [DOI], [PDF]
Iglesias, Juan Eugenio; Konukoglu, Ender; Zikic, Darko; Glocker, Ben; Van Leemput, Koen and Fischl, Bruce, Is Synthesizing MRI Contrast Useful for Inter-modality Analysis?, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
Augustinack, Jean C; van der Kouwe, Andre J W and Fischl, Bruce, Medial temporal cortices in ex vivo MRI, The Journal of comparative neurology, [PDF]
Greve, Douglas N; Van der Haegen, Lise; Cai, Q; Stufflebeam, Steven M; Sabuncu, Mert R; Fischl, Bruce and Brysbaert, M, A surface-based analysis of language lateralization and cortical asymmetry, Journal of cognitive neuroscience, [DOI],
Jennifer A. McNab, Jonathan R. Polimeni, Ruopeng Wang, Jean C. Augustinack, Kyoko Fujimoto, Allison Stevens, Thomas Janssens, Reza Farivar, Rebecca D. Folkerth, Wim Vanduffel, Lawrence L. Wald, Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex, NeuroImage, Volume 69, 2013, Pages 87-100, ISSN 1053-8119, [DOI], [PDF]
Greve, Douglas N; Brown, Gregory G; Mueller, Bryon A; Glover, Gary and Liu, Thomas, A survey of the sources of noise in fMRI, Psychometrika, [DOI], [PDF]
Caroline Magnain, Jean C. Augustinack, Martin Reuter, Christian Wachinger, Matthew P. Frosch, Timothy Ragan, Taner Akkin, Van J. Wedeen, David A. Boas, Bruce Fischl, Blockface histology with optical coherence tomography: A comparison with Nissl staining, NeuroImage, Volume 84, 2014, Pages 524-533, ISSN 1053-8119, [DOI], [PDF]
Iglesias, Juan Eugenio; Sabuncu, Mert R and Van Leemput, Koen, Improved inference in Bayesian segmentation using Monte Carlo sampling: Application to hippocampal subfield volumetry, Medical Image Analysis, [PDF]
I. Aganj, B. T. T. Yeo, M. R. Sabuncu and B. Fischl, “On Removing Interpolation and Resampling Artifacts in Rigid Image Registration,” in IEEE Transactions on Image Processing, vol. 22, no. 2, pp. 816-827, Feb. 2013, [DOI], [PDF]
Konukoglu, Ender; van der Kouwe, Andre J W; Sabuncu, Mert R and Fischl, Bruce, Example-based Restoration of High-resolution Magnetic Resonance Image Acquisitions, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
Konukoglu, Ender; Ganz, Melanie; Van Leemput, Koen and Sabuncu, Mert Rory, On Feature Relevance in Image-based Prediction Models : An Empirical Study, 4th International Workshop on Machine Learning in Medical Imaging (MLMI), in conjunction with MICCAI, [PDF]
Jean C. Augustinack, Caroline Magnain, Martin Reuter, André J.W. van der Kouwe, David Boas, Bruce Fischl, MRI parcellation of ex vivo medial temporal lobe, NeuroImage, Volume 93, Part 2, 2014, Pages 252-259, ISSN 1053-8119, [DOI], [PDF]
James Kolasinski, Emi Takahashi, Allison A. Stevens, Thomas Benner, Bruce Fischl, Lilla Zöllei, P. Ellen Grant, Radial and tangential neuronal migration pathways in the human fetal brain: Anatomically distinct patterns of diffusion MRI coherence, NeuroImage, Volume 79, 2013, Pages 412-422, ISSN 1053-8119, [DOI], [PDF]
Jennifer A. McNab, Jonathan R. Polimeni, Ruopeng Wang, Jean C. Augustinack, Kyoko Fujimoto, Allison Stevens, Christina Triantafyllou, Thomas Janssens, Reza Farivar, Rebecca D. Folkerth, Wim Vanduffel, Lawrence L. Wald, Corrigendum to “Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex” [NeuroImage 69 (2013) 87–100], NeuroImage, Volume 81, 2013, Page 505, ISSN 1053-8119, [DOI], [PDF]
Jorge L. Bernal-Rusiel, Martin Reuter, Douglas N. Greve, Bruce Fischl, Mert R. Sabuncu, Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data, NeuroImage, Volume 81, 2013, Pages 358-370, ISSN 1053-8119, [DOI], [PDF]
Ye, D H; Zikic, Darko; Glocker, Ben; Criminisi, A and Konukoglu, Ender, Modality Propagation: Coherent Synthesis of Subject-Specific Scans with Data-Driven Regularization, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
Jean C. Augustinack, Kristen E. Huber, Allison A. Stevens, Michelle Roy, Matthew P. Frosch, André J.W. van der Kouwe, Lawrence L. Wald, Koen Van Leemput, Ann C. McKee, Bruce Fischl, Predicting the location of human perirhinal cortex, Brodmann’s area 35, from MRI, NeuroImage, Volume 64, 2013, Pages 32-42, ISSN 1053-8119, [DOI], [PDF]
Iglesias, Juan Eugenio; Sabuncu, Mert Rory and Van Leemput, Koen, A Probabilistic, Non-parametric Framework for Inter-modality Label Fusion, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
Jorge L. Bernal-Rusiel, Martin Reuter, Douglas N. Greve, Bruce Fischl, Mert R. Sabuncu, Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data, NeuroImage, Volume 81, 2013, Pages 358-370, ISSN 1053-8119, [DOI], [PDF]
2012
David Salat, Mireia Campos, Joan Montaner, Avances en la fisiopatología y el tratamiento de las infecciones en la fase aguda del ictus,Medicina Clínica,Volume 139, Issue 15, 2012, Pages 681-687, ISSN 0025-7753, [DOI], [PDF]
Chapman, G William; Jefferson, Angela; Gifford, Katherine; Sparling, Jamie; Cantwell, Nicole; Romano, Raymond; Dobromyslin, Vitaly I and Salat, David H, Grey-white matter contrast ratio relates to progression in mild cognitive impairment, Alzheimer’s & Dementia, [DOI], [PDF]
M. R. Sabuncu and K. Van Leemput, “The Relevance Voxel Machine (RVoxM): A Self-Tuning Bayesian Model for Informative Image-Based Prediction,” in IEEE Transactions on Medical Imaging, vol. 31, no. 12, pp. 2290-2306, Dec. 2012, [DOI], [PDF]
Tisdall, M Dylan; Hess, Aaron T; Reuter, Martin; Meintjes, Ernesta M; Fischl, Bruce and van der Kouwe, Andre J W, Volumetric navigators for prospective motion correction and selective reacquisition in neuroanatomical MRI, Magnetic resonance in medicine, [DOI], [PDF]
Iglesias, Juan Eugenio; Sabuncu, Mert R and Van Leemput, Koen, A generative model for multi-atlas segmentation across modalities, IEEE International Symposium on Biomedical Imaging, [PDF]
Alhamud, A; Tisdall, M Dylan; Hess, Aaron T; Hasan, Khader M; Meintjes, Ernesta M and van der Kouwe, Andre J W, Volumetric navigators for real-time motion correction in diffusion tensor imaging, Magnetic resonance in medicine, [DOI], [PDF]
Mert R. Sabuncu, Randy L. Buckner, Jordan W. Smoller, Phil Hyoun Lee, Bruce Fischl, Reisa A. Sperling, for the Alzheimer’s Disease Neuroimaging Initiative, The Association between a Polygenic Alzheimer Score and Cortical Thickness in Clinically Normal Subjects, Cerebral Cortex, Volume 22, Issue 11, November 2012, Pages 2653–2661, [DOI], [PDF]
R.J. Cooper, Louis Gagnon, Daniel M. Goldenholz, David A. Boas, Douglas N. Greve, The utility of near-infrared spectroscopy in the regression of low-frequency physiological noise from functional magnetic resonance imaging data, NeuroImage, Volume 59, Issue 4, 2012, Pages 3128-3138, ISSN 1053-8119, [DOI], [PDF]
Toews, Matthew; Wells, William M and Zollei, Lilla, A feature-based developmental model of the infant brain in structural MRI, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
Iglesias, Juan Eugenio; Sabuncu, Mert Rory and Van Leemput, Koen, Incorporating Parameter Uncertainty in Bayesian Segmentation Models : Application to Hippocampal Subfield Volumetry, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
Iglesias, Juan Eugenio; Sabuncu, Mert Rory and Van Leemput, Koen, A Generative Model for Probabilistic Label Fusion of Multimodal Data, Multimodal Brain Image Analysis, [PDF]
David H. Salat, Victoria J. Williams, Elizabeth C. Leritz, David M. Schnyer, James L. Rudolph, Lewis A. Lipsitz, Regina E. McGlinchey, William P. Milberg, Inter-individual variation in blood pressure is associated with regional white matter integrity in generally healthy older adults,NeuroImage,Volume 59, Issue 1, 2012, Pages 181-192, ISSN 1053-8119, [DOI], [PDF[
Martin Reuter, Nicholas J. Schmansky, H. Diana Rosas, Bruce Fischl, Within-subject template estimation for unbiased longitudinal image analysis, NeuroImage, Volume 61, Issue 4, 2012, Pages 1402-1418, ISSN 1053-8119, [DOI], [PDF]
Bruce Fischl, FreeSurfer, NeuroImage, Volume 62, Issue 2, 2012, Pages 774-781, ISSN 1053-8119, [DOI], [PDF]
2011
D.H. Salat, J.J. Chen, A.J. van der Kouwe, D.N. Greve, B. Fischl, H.D. Rosas, Hippocampal degeneration is associated with temporal and limbic gray matter/white matter tissue contrast in Alzheimer’s disease, NeuroImage, Volume 54, Issue 3, 2011, Pages 1795-1802, ISSN 1053-8119, [DOI], [PDF]
J. Cohen-Adad, T. Benner, D. Greve, R.P. Kinkel, A. Radding, B. Fischl, B.R. Rosen, C. Mainero, In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7T: A surface-based analysis, NeuroImage, Volume 57, Issue 1, 2011, Pages 55-62, ISSN 1053-8119, [DOI], [PDF[
Martin Reuter, Bruce Fischl, Avoiding asymmetry-induced bias in longitudinal image processing, NeuroImage, Volume 57, Issue 1, 2011, Pages 19-21, ISSN 1053-8119, [DOI], [PDF]
Sabuncu, Mert R and Van Leemput, Koen, The Relevance Voxel Machine (RVoxM): a Bayesian method for image-based prediction, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
Greve, Douglas N; Mueller, Bryon A; Liu, Timothy Y; Turner, Jessica A; Voyvodic, James; Yetter, Elizabeth; Diaz, Michele; McCarthy, Gregory; Wallace, Stuart R; Roach, Brian J; Ford, Judy M; Mathalon, Daniel H; Calhoun, Vince D; Wible, Cynthia G; Brown, Gregory G; Potkin, Steven G and Glover, Gary, A novel method for quantifying scanner instability in fMRI, Magnetic resonance in medicine, [DOI], [PDF]
J. Jean Chen, H. Diana Rosas, David H. Salat, Age-associated reductions in cerebral blood flow are independent from regional atrophy, NeuroImage, Volume 55, Issue 2, 2011, Pages 468-478, ISSN 1053-8119, [DOI], [PDF]
Yendiki, Anastasia; Panneck, Patricia; Srinivasan, Priti; Stevens, Allison; Zollei, Lilla; Augustinack, Jean C; Wang, Ruopeng; Salat, David; Ehrlich, Stefan; Behrens, Tim; Jbabdi, Saad; Gollub, Randy L and Fischl, Bruce, Automated probabilistic reconstruction of white-matter pathways in health and disease using an atlas of the underlying anatomy, Frontiers in neuroinformatics, [DOI], [PDF]
Hess, Aaron T; Tisdall, M Dylan; Andronesi, Ovidiu C; Meintjes, Ernesta M and van der Kouwe, Andre J W, Real‐time motion and B0 corrected single voxel spectroscopy using volumetric navigators, Magnetic resonance in medicine, [DOI], [PDF]
Sabuncu, Mert R; Desikan, Rahul S; Sepulcre, Jorge; Yeo, B T Thomas; Liu, Hesheng; Schmansky, Nicholas J; Reuter, Martin; Weiner, Michael W; Buckner, Randy L; Sperling, Reisa a and Fischl, Bruce, The dynamics of cortical and hippocampal atrophy in Alzheimer disease, Archives of neurology, [DOI], [PDF]
Jefferson, Angela; Gifford, Katherine; Chapman, George; Dobromyslin, Vitaly I; Palmisano, Joseph; Gentile, Amanda; Tripodis, Yorghos and Salat, David H, An index of vascular health is associated with white matter and hippocampal changes in individuals with mild cognitive impairment, Alzheimer’s & Dementia, [DOI], [PDF]
Tisdall, M Dylan; Lockhart, Richard a and Atkins, M Stella, The bias/variance trade-off when estimating the MR signal magnitude from the complex average of repeated measurements, Magnetic resonance in medicine, [DOI], [PDF]
2010
Yeo, B T Thomas; Sabuncu, Mert R; Vercauteren, Tom; Holt, Daphne J; Amunts, Katrin; Zilles, Karl; Golland, Polina and Fischl, Bruce, Learning task-optimal registration cost functions for localizing cytoarchitecture and function in the cerebral cortex, IEEE transactions on medical imaging, [DOI], [PDF]
Rahul S. Desikan, Howard J. Cabral, Fabio Settecase, Christopher P. Hess, William P. Dillon, Christine M. Glastonbury, Michael W. Weiner, Nicholas J. Schmansky, David H. Salat, Bruce Fischl, Automated MRI measures predict progression to Alzheimer’s disease, Neurobiology of Aging, Volume 31, Issue 8, 2010, Pages 1364-1374, ISSN 0197-4580, [DOI], [PDF]
M. R. Sabuncu, B. T. T. Yeo, K. Van Leemput, B. Fischl and P. Golland, “A Generative Model for Image Segmentation Based on Label Fusion,” in IEEE Transactions on Medical Imaging, vol. 29, no. 10, pp. 1714-1729, Oct. 2010, [DOI], [PDF]
Lilla Zöllei, Allison Stevens, Kristen Huber, Sita Kakunoori, Bruce Fischl, Improved tractography alignment using combined volumetric and surface registration, NeuroImage, Volume 51, Issue 1, 2010, Pages 206-213, ISSN 1053-8119, [DOI], [PDF]
Satrajit S. Ghosh, Sita Kakunoori, Jean Augustinack, Alfonso Nieto-Castanon, Ioulia Kovelman, Nadine Gaab, Joanna A. Christodoulou, Christina Triantafyllou, John D.E. Gabrieli, Bruce Fischl, Evaluating the validity of volume-based and surface-based brain image registration for developmental cognitive neuroscience studies in children 4 to 11years of age, NeuroImage, Volume 53, Issue 1, 2010, Pages 85-93, ISSN 1053-8119, [DOI], [PDF]
Desikan RS, Sabuncu MR, Schmansky NJ, Reuter M, Cabral HJ, Hess CP, et al. (2010) Selective Disruption of the Cerebral Neocortex in Alzheimer’s Disease. PLoS ONE 5(9): e12853, [DOI], [PDF]
D.H. Salat, D.S. Tuch, A.J.W. van der Kouwe, D.N. Greve, V. Pappu, S.Y. Lee, N.D. Hevelone, A.K. Zaleta, J.H. Growdon, S. Corkin, B. Fischl, H.D. Rosas, White matter pathology isolates the hippocampal formation in Alzheimer’s disease, Neurobiology of Aging, Volume 31, Issue 2, 2010, Pages 244-256, ISSN 0197-4580, [DOI], [PDF]
Augustinack JC, Helmer K, Huber KE, Kakunoori S, Zöllei L and Fischl B (2010) Direct visualization of the perforant pathway in the human brain with ex vivo diffusion tensor imaging. Front. Hum. Neurosci., [DOI], [PDF[
Anastasia Yendiki, Douglas N. Greve, Stuart Wallace, Mark Vangel, Jeremy Bockholt, Bryon A. Mueller, Vince Magnotta, Nancy Andreasen, Dara S. Manoach, Randy L. Gollub, Multi-site characterization of an fMRI working memory paradigm: Reliability of activation indices, NeuroImage, Volume 53, Issue 1, 2010, Pages 119-131, ISSN 1053-8119, [DOI], [PDF]
Martin Reuter, H. Diana Rosas, Bruce Fischl, Highly accurate inverse consistent registration: A robust approach, NeuroImage, Volume 53, Issue 4, 2010, Pages 1181-1196, ISSN 1053-8119, [DOI], [PDF]
2009
K. Van Leemput, “Encoding Probabilistic Brain Atlases Using Bayesian Inference,” in IEEE Transactions on Medical Imaging, vol. 28, no. 6, pp. 822-837, June 2009, [DOI], [PDF]
David H. Salat, Douglas N. Greve, Jennifer L. Pacheco, Brian T. Quinn, Karl G. Helmer, Randy L. Buckner, Bruce Fischl, Regional white matter volume differences in nondemented aging and Alzheimer’s disease, NeuroImage, Volume 44, Issue 4, 2009, Pages 1247-1258, ISSN 1053-8119, [DOI], [PDF]
A. Yendiki, A. Lundquist, S. Wallace, A. Stevens, J. Augustinack, D. Manoach, B. Fischl, R. Gollub, A Study on the Integrity of White-Matter Pathways in Chronic Schizophrenia by Probabilistic Diffusion Tractography, NeuroImage, Volume 47, Supplement 1, 2009, Page S136, ISSN 1053-8119, [DOI], [PDF]
Yendiki, Anastasia; Stevens, Allison A; Augustinack, Jean C; Salat, David H; Zollei, Lilla and Fischl, Bruce, Anatomical priors for global probabilistic diffusion tractography, IEEE International Symposium on Biomedical Imaging, [PDF]
Bruce Fischl, Allison A. Stevens, Niranjini Rajendran, B.T. Thomas Yeo, Douglas N. Greve, Koen Van Leemput, Jonathan R. Polimeni, Sita Kakunoori, Randy L. Buckner, Jennifer Pacheco, David H. Salat, Jennifer Melcher, Matthew P. Frosch, Bradley T. Hyman, P. Ellen Grant, Bruce R. Rosen, André J.W. van der Kouwe, Graham C. Wiggins, Lawrence L. Wald, Jean C. Augustinack, Predicting the location of entorhinal cortex from MRI, NeuroImage, Volume 47, Issue 1, 2009, Pages 8-17, ISSN 1053-8119, [DOI], [PDF]
Postelnicu, G; Zollei, Lilla and Fischl, Bruce, Combined volumetric and surface registration, IEEE transactions on medical imaging, [DOI], [PDF]
Douglas N. Greve, Bruce Fischl, Accurate and robust brain image alignment using boundary-based registration, NeuroImage, Volume 48, Issue 1, 2009, Pages 63-72, ISSN 1053-8119, [DOI], [PDF]
David H. Salat, Stephanie Y. Lee, Peng Yu, Bindu Setty, H. Diana Rosas, P. Ellen Grant, Chapter 10 – DTI in Development and Aging, Editor(s): Heidi Johansen-Berg, Timothy E.J. Behrens, Diffusion MRI, Academic Press, 2009, Pages 205-236, ISBN 9780123747099, [DOI]
Van Leemput, Koen; Bakkour, Akram; Benner, Thomas; Wiggins, Graham C; Wald, Lawrence L; Augustinack, Jean C; Dickerson, Bradford C; Golland, Polina and Fischl, Bruce, Automated segmentation of hippocampal subfields from ultra-high resolution in vivo MRI, Hippocampus, [DOI], [PDF]
Sabuncu, Mert R; Yeo, B T Thomas; Van Leemput, Koen; Fischl, Bruce and Golland, Polina, Supervised nonparametric image parcellation, Medical image computing and computer-assisted intervention : MICCAI, [PDF[
Jorge Jovicich, Silvester Czanner, Xiao Han, David Salat, Andre van der Kouwe, Brian Quinn, Jenni Pacheco, Marilyn Albert, Ronald Killiany, Deborah Blacker, Paul Maguire, Diana Rosas, Nikos Makris, Randy Gollub, Anders Dale, Bradford C. Dickerson, Bruce Fischl, MRI-derived measurements of human subcortical, ventricular and intracranial brain volumes: Reliability effects of scan sessions, acquisition sequences, data analyses, scanner upgrade, scanner vendors and field strengths, NeuroImage, Volume 46, Issue 1, 2009, Pages 177-192, ISSN 1053-8119, [DOI], [PDF]
Martin Reuter, Franz-Erich Wolter, Martha Shenton, Marc Niethammer, Laplace–Beltrami eigenvalues and topological features of eigenfunctions for statistical shape analysis, Computer-Aided Design, Volume 41, Issue 10, 2009, Pages 739-755, ISSN 0010-4485, [DOI], [PDF[
Yeo, B T Thomas; Sabuncu, Mert; Golland, Polina and Fischl, Bruce, Task-optimal registration cost functions, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
Rahul S. Desikan, Howard J. Cabral, Christopher P. Hess, William P. Dillon, Christine M. Glastonbury, Michael W. Weiner, Nicholas J. Schmansky, Douglas N. Greve, David H. Salat, Randy L. Buckner, Bruce Fischl, Alzheimer’s Disease Neuroimaging Initiative, Automated MRI measures identify individuals with mild cognitive impairment and Alzheimer’s disease, Brain, Volume 132, Issue 8, August 2009, Pages 2048–2057, [DOI], [PDF]
Sabuncu, Mert R; Yeo, B T Thomas; Van Leemput, Koen; Fischl, Bruce and Golland, Polina, Nonparametric mixture models for supervised image parcellation, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
D.H. Salat, S.Y. Lee, A.J. van der Kouwe, D.N. Greve, B. Fischl, H.D. Rosas, Age-associated alterations in cortical gray and white matter signal intensity and gray to white matter contrast, NeuroImage, Volume 48, Issue 1, 2009, Pages 21-28, ISSN 1053-8119, [DOI], [PDF]
2008
André J.W. van der Kouwe, Thomas Benner, David H. Salat, Bruce Fischl, Brain morphometry with multiecho MPRAGE, NeuroImage, Volume 40, Issue 2, 2008, Pages 559-569, ISSN 1053-8119, [DOI], [PDF]
B.C. Dickerson, E. Fenstermacher, D.H. Salat, D.A. Wolk, R.P. Maguire, R. Desikan, J. Pacheco, B.T. Quinn, A. Van der Kouwe, D.N. Greve, D. Blacker, M.S. Albert, R.J. Killiany, B. Fischl, Detection of cortical thickness correlates of cognitive performance: Reliability across MRI scan sessions, scanners, and field strengths, NeuroImage, Volume 39, Issue 1, 2008, Pages 10-18, ISSN 1053-8119, [DOI], [PDF]
Van Leemput, Koen; Bakkour, Akram; Benner, Thomas; Wiggins, Graham C; Wald, Lawrence L; Augustinack, Jean C; Dickerson, Bradford C; Golland, Polina and Fischl, Bruce, Model-based segmentation of hippocampal subfields in ultra-high resolution in vivo MRI, edical image computing and computer-assisted intervention : MICCAI, [PDF]
K.B. Walhovd, V. Moe, K. Slinning, P. Due-Tønnessen, A. Bjørnerud, A.M. Dale, A. van der Kouwe, B.T. Quinn, B. Kosofsky, D. Greve, B. Fischl, Corrigendum to “Volumetric cerebral characteristics of children exposed to opiates and other substances in utero” [NeuroImage 36 (2007) 1331–1344], NeuroImage, Volume 41, Issue 4, 2008, Pages 1514-1516, ISSN 1053-8119, [DOI], [PDF]
Oliver P. Hinds, Niranjini Rajendran, Jonathan R. Polimeni, Jean C. Augustinack, Graham Wiggins, Lawrence L. Wald, H. Diana Rosas, Andreas Potthast, Eric L. Schwartz, Bruce Fischl, Accurate prediction of V1 location from cortical folds in a surface coordinate system, NeuroImage, Volume 39, Issue 4, 2008, Pages 1585-1599, ISSN 1053-8119, [DOI], [PDF]
Bruce Fischl, Niranjini Rajendran, Evelina Busa, Jean Augustinack, Oliver Hinds, B.T. Thomas Yeo, Hartmut Mohlberg, Katrin Amunts, Karl Zilles, Cortical Folding Patterns and Predicting Cytoarchitecture, Cerebral Cortex, Volume 18, Issue 8, August 2008, Pages 1973–1980, [DOI], [PDF]
2007
Postelnicu, Gheorghe; Zollei, Lilla; Desikan, Rahul S and Fischl, Bruce, Geometry driven volumetric registration, nformation processing in medical imaging : proceedings of the conference, [PDF]
Zollei, Lilla; Shenton, Martha; Wells, William M and Pohl, Kilian, The impact of atlas formation methods on atlas-guided brain segmentation, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
Bischoff-Grethe, Amanda; Ozyurt, I Burak; Busa, Evelina; Quinn, Brian T; Fennema-Notestine, Christine; Clark, Camellia P; Morris, Shaunna; Bondi, Mark W; Jernigan, Terry L; Dale, Anders M; Brown, Gregory G and Fischl, Bruce, A technique for the deidentification of structural brain MR images, Human Brain Mapping, [DOI], [PDF]
K.B. Walhovd, V. Moe, K. Slinning, P. Due-Tønnessen, A. Bjørnerud, A.M. Dale, A. van der Kouwe, B.T. Quinn, B. Kosofsky, D. Greve, B. Fischl, Volumetric cerebral characteristics of children exposed to opiates and other substances in utero, NeuroImage, Volume 36, Issue 4, 2007, Pages 1331-1344, ISSN 1053-8119, [DOI], [PDF]
Fennema-Notestine, Christine; Gamst, Anthony C; Quinn, Brian T; Pacheco, Jennifer L; Jernigan, Terry L; Thal, Leon; Buckner, Randy L; Killiany, Ronald J; Blacker, Deborah; Dale, Anders M; Fischl, Bruce; Dickerson, Bradford C and Gollub, Randy L, Feasibility of Multi-site Clinical Structural Neuroimaging Studies of Aging Using Legacy Data. Neuroinform 5, 235–245, 2007, [DOI], [PDF]
Zollei, Lilla; Jenkinson, Mark; Timoner, Samson and Wells, William M, A marginalized MAP approach and EM optimization for pair-wise registration, Information processing in medical imaging : proceedings of the conference, [PDF]
Yeo, B T Thomas; Sabuncu, Mert R; Mohlberg, Hartmut; Amunts, Katrin; Zilles, Karl; Golland, Polina and Fischl, Bruce, What Data to Co-register for Computing Atlases, IEEE International Conference on Computer Vision, [DOI], [PDF]
Yu, Peng; Grant, P Ellen; Qi, Yuan; Han, Xiao; Segonne, Florent; Pienaar, Rudolph; Busa, Evelina; Pacheco, Jennifer L; Makris, Nikos; Buckner, Randy L; Golland, Polina and Fischl, Bruce, Cortical surface shape analysis based on spherical wavelets, IEEE transactions on medical imaging, [DOI], [PDF]
Ségonne, F. Active Contours Under Topology Control—Genus Preserving Level Sets. Int J Comput Vis 79, 107–117, 2008, [DOI], [PDF]
X. Han and B. Fischl, “Atlas Renormalization for Improved Brain MR Image Segmentation Across Scanner Platforms,” in IEEE Transactions on Medical Imaging, vol. 26, no. 4, pp. 479-486, April 2007, [DOI], [PDF]
Fischl, Bruce and Wald, Lawrence L, Phase maps reveal cortical architecture, Proceedings of the National Academy of Sciences of the United States of America, [DOI], [PDF]
F. Segonne, J. Pacheco and B. Fischl, “Geometrically Accurate Topology-Correction of Cortical Surfaces Using Nonseparating Loops,” in IEEE Transactions on Medical Imaging, vol. 26, no. 4, pp. 518-529, April 2007, [DOI], [PDF]
2006
Han, Xiao; Jovicich, Jorge; Salat, David H; van der Kouwe, Andre J W; Quinn, Brian T; Czanner, Silvester; Busa, Evelina; Pacheco, Jennifer L; Albert, Marilyn S; Killiany, Ronald J; Maguire, R Paul; Rosas, H Diana; Makris, Nikos; Dale, Anders M; Dickerson, Bradford C and Fischl, Bruce, Reliability of MRI-derived measurements of human cerebral cortical thickness: The effects of field strength, scanner upgrade and manufacturer, Neuroimage, [PDF]
Salat, David H; van der Kouwe, Andre J W; Tuch, David S; Quinn, Brian T; Fischl, Bruce; Dale, Anders M and Corkin, Suzanne, Neuroimaging HM: A 10-year follow-up examination, Hippocampus, [PDF]
Augustinack, Jean C; van der Kouwe, Andre J W; Postelnicu, Gheorghe M; Wiggins, Graham C; Frosch, Matthew P and Fischl, Bruce, P2-333: High resolution structural magnetic resonance images of the entorhinal cortex predict the presence of verrucae in 3D reconstruction volumes in control brains, Alzheimer’s & Dementia, [DOI], [PDF]
2005
Lazar, Sara W; Kerr, Catherine E; Wasserman, Rachel H; Gray, Jeremy R; Greve, Douglas N; Treadway, Michael T; McGarvey, Metta; Quinn, Brian T; Dusek, Jeffery A; Benson, Herbert; Rauch, Scott L; Moore, Christopher I and Fischl, Bruce, Meditation experience is associated with increased cortical thickness, Neuroreport, [PDF]
Segonne, Florent; Grimson, W Eric L and Fischl, Bruce, A genetic algorithm for the topology correction of cortical surfaces, nformation processing in medical imaging : proceedings of the conference, [PDF]
Kristine B. Walhovd, Anders M. Fjell, Ivar Reinvang, Arvid Lundervold, Anders M. Dale, Dag E. Eilertsen, Brian T. Quinn, David Salat, Nikos Makris, Bruce Fischl, Effects of age on volumes of cortex, white matter and subcortical structures, Neurobiology of Aging, Volume 26, Issue 9, 2005, Pages 1261-1270, ISSN 0197-4580, [DOI], [PDF]
Kristine B. Walhovd, Anders M. Fjell, Ivar Reinvang, Arvid Lundervold, Anders M. Dale, Brian T. Quinn, David Salat, Nikos Makris, Bruce Fischl, Neuroanatomical aging: Universal but not uniform, Neurobiology of Aging, Volume 26, Issue 9, 2005, Pages 1279-1282, ISSN 0197-4580, [DOI], [PDF]
D.H. Salat, D.S. Tuch, D.N. Greve, A.J.W. van der Kouwe, N.D. Hevelone, A.K. Zaleta, B.R. Rosen, B. Fischl, S. Corkin, H. Diana Rosas, A.M. Dale, Age-related alterations in white matter microstructure measured by diffusion tensor imaging, Neurobiology of Aging, Volume 26, Issue 8, 2005, Pages 1215-1227, ISSN 0197-4580, [DOI], [PDF]
Salat, David H; Tuch, David S; Hevelone, N D; Fischl, Bruce; Corkin, Suzanne; Rosas, H Diana and Dale, Anders M, Age-related changes in prefrontal white matter measured by diffusion tensor imaging, Annals of the New York Academy of Sciences, [DOI], [PDF]
Augustinack, Jean C; van der Kouwe, Andre J W; Blackwell, Megan L; Salat, David H; Wiggins, Christopher J; Frosch, Matthew P; Wiggins, Graham C; Potthast, Andreas; Wald, Lawrence L and Fischl, Bruce, Detection of entorhinal layer II using 7Tesla magnetic resonance imaging, Annals of Neurology, [DOI], [PDF]
Fjell, Anders M; Walhovd, Kristine B; Reinvang, Ivar; Lundervold, Arvid; Dale, Anders M; Quinn, Brian T; Makris, Nikos and Fischl, Bruce. (2005). Age does not increase rate of forgetting over weeks—Neuroanatomical volumes and visual memory across the adult life-span. Journal of the International Neuropsychological Society, 11(1), 2-15, [DOI], [PDF]
André J.W. van der Kouwe, Thomas Benner, Bruce Fischl, Franz Schmitt, David H. Salat, Martin Harder, A. Gregory Sorensen, Anders M. Dale, On-line automatic slice positioning for brain MR imaging, NeuroImage, Volume 27, Issue 1, 2005, Pages 222-230, ISSN 1053-8119, [DOI], [PDF]
Rosas, H Diana; Hevelone, N D; Zaleta, Alexandra K; Greve, Douglas N; Salat, David H and Fischl, Bruce, Regional cortical thinning in preclinical Huntington disease and its relationship to cognition, Neurology, [DOI], [PDF]
2004
Nikki R. Horne, Mark W. Bondi, Christine Fennema-Notestine, Wes S. Houston, Greg G. Brown, Terry L. Jernigan, David P. Salmon, Laura B. Mickes, Bruce Fischl, P2-187 Hippocampal and amygdalal brain changes in young-old and very-old with Alzheimer’s disease: associations with neuropsychological functioning, Neurobiology of Aging, Volume 25, Supplement 2, 2004, Page S281, ISSN 0197-4580, [DOI]
Scott L Rauch, Christopher I Wright, Brian Martis, Evelina Busa, Katherine G McMullin, Lisa M Shin, Anders M Dale, Bruce Fischl, A magnetic resonance imaging study of cortical thickness in animal phobia, Biological Psychiatry, Volume 55, Issue 9, 2004, Pages 946-952, ISSN 0006-3223, [DOI], [PDF]
Salat, David H; Buckner, Randy L; Snyder, Abraham Z; Greve, Douglas N; Desikan, Rahul S; Busa, Evelina; Morris, John Carl; Dale, Anders M and Fischl, Bruce, Thinning of the cerebral cortex in aging, Cerebral Cortex, [PDF]
Bruce Fischl, David H. Salat, André J.W. van der Kouwe, Nikos Makris, Florent Ségonne, Brian T. Quinn, Anders M. Dale,
Sequence-independent segmentation of magnetic resonance images, NeuroImage, Volume 23, Supplement 1, 2004, Pages S69-S84, ISSN 1053-8119, [DOI], [PDF]
Bruce Fischl, André van der Kouwe, Christophe Destrieux, Eric Halgren, Florent Ségonne, David H. Salat, Evelina Busa, Larry J. Seidman, Jill Goldstein, David Kennedy, Verne Caviness, Nikos Makris, Bruce Rosen, Anders M. Dale, Automatically Parcellating the Human Cerebral Cortex, Cerebral Cortex, Volume 14, Issue 1, January 2004, Pages 11-22, [DOI], [PDF]
Florent Segonne, Anders M. Dale, Evelina Busa, Maureen Glessner, David Salat, Horst K. Hahn, Bruce Fischl, A hybrid approach to the Skull Stripping problem in MRI, NeuroImage, Volume 13, Issue 6, Supplement, 2001, Page 241, ISSN 1053-8119, [DOI], [PDF]
2003
Segonne, Florent; Grimson, W Eric L and Fischl, Bruce, Topological correction of subcortical segmentation, Medical image computing and computer-assisted intervention : MICCAI, [PDF]
Golland, Polina and Fischl, Bruce, Permutation tests for classification: towards statistical significance in image-based studies, Information processing in medical imaging : proceedings of the conference, [PDF]
G.R. Kuperberg, M. Broome, P.K. McGuire, A.S. David, M. Eddy, F. Ozawa, D. Goff, W.C. West, S.R. Williams, A.W. van der Kouwe, D. Salat, A.M. Dale, B. Fischl, Regionally localized thinning of the cerebral cortex in schizophrenia, Schizophrenia Research, Volume 60, Issue 1, Supplement, 2003, Pages 199-200, ISSN 0920-9964, [DOI], [PDF]
2002
Rosas, H Diana; Liu, Arthur K; Hersch, Steven M; Glessner, Maureen; Ferrante, R J; Salat, D H; van der Kouwe, Andre J W; Jenkins, Bruce G; Dale, Anders M and Fischl, Bruce, Regional and progressive thinning of the cortical ribbon in Huntington’s disease, Neurology, [PDF]
Fischl, Bruce; Salat, David H; Busa, Evelina; Albert, Marilyn S; Dieterich, M; Haselgrove, Christian; van der Kouwe, Andre J W; Killiany, Ronald J; Kennedy, David N; Klaveness, S; Montillo, A; Makris, Nikos; Rosen, Bruce R and Dale, Anders M, Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain, Neuron, [PDF]
2001
Bruce Fischl, David Salat, David Kennedy, Nikos Makris, Marilyn Albert, Ron Killiany, Anders Dale, Automatic segmentation of the structures in the human brain, NeuroImage, Volume 13, Issue 6, Supplement, 2001, Page 118, ISSN 1053-8119, [DOI]
André van der Kouwe, Anders Dale, Real-time motion correction using octant navigators, NeuroImage, Volume 13, Issue 6, Supplement, 2001, Page 48, ISSN 1053-8119, [DOI], [PDF]
Fischl, Bruce; Liu, Arthur K and Dale, Anders M, Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex, IEEE transactions on medical imaging, [PDF]
David H. Salat, Randy L. Buckner, Abraham Z. Snyder, Rahul Desikan, John C. Morris, Andres M. Dale, Bruce Fischl, Regional cortical thinning of the aging brain, NeuroImage, Volume 13, Issue 6, Supplement, 2001, Page 831, ISSN 1053-8119, [DOI], [PDF]
2000
Anders M. Dale, Arthur K. Liu, Bruce R. Fischl, Randy L. Buckner, John W. Belliveau, Jeffrey D. Lewine, Eric Halgren,
Dynamic Statistical Parametric Mapping: Combining fMRI and MEG for High-Resolution Imaging of Cortical Activity, Neuron, Volume 26, Issue 1, 2000, Pages 55-67, ISSN 0896-6273, [DOI], [PDF]
Rahul Desikan, Omri Schwarz, Arthur Liu, Anders M. Dale, Bruce Fischl, Structural motion correction and cortical surfaces: a comparison of various motion correction algorithims using reconstructed cortical surfaces, NeuroImage, Volume 11, Issue 5, Supplement, 2000, Page S514, ISSN 1053-8119, [DOI], [PDF]
Koen Van Leemput, Frederik Maes, Fernando Bello, Dirk Vandermeulen, Alan Colchester, Paul Suetens, Automated segmentation of MS lesions in MR, NeuroImage, Volume 11, Issue 5, Supplement, 2000, Page S565, ISSN 1053-8119, [DOI], [PDF]
Fischl, Bruce and Dale, Anders M. Measuring the thickness of the human cerebral cortex from magnetic resonance images. Proceedings of the National Academy of Sciences of the United States of America. [PDF]
Herminia Diana Rosas, Arthur Liu, Eric Halgren, Walter Koroshetz, Y. Iris Chen, Bruce Jenkins, Bruce Fischl,
A characterization of regional changes in cortical thickness in Huntington’s disease, NeuroImage, Volume 11, Issue 5, Supplement, 2000, Page S174, ISSN 1053-8119, [DOI], [PDF]
1999
Fischl, Bruce and Schwartz, Eric L. Adaptive nonlocal filtering: a fast alternative to anisotropic diffusion for image enhancement. Pattern Analysis and Machine Intelligence, IEEE Transactions. [PDF]
Fischl, Bruce; Sereno, Martin I; Tootell, Roger B H and Dale, Anders M. High-resolution intersubject averaging and a coordinate system for the cortical surface. NeuroImage, Volume 9, Issue 2, 1999, Pages 179-194, ISSN 1053-8119, [DOI], [PDF]
Dale, Anders M; Fischl, Bruce; Sereno, Martin I; Dale, Anders M; Fischl, Bruce and Sereno, Martin I. Cortical Surface-Based Analysis: I. Segmentation and Surface Reconstruction. NeuroImage, Volume 9, Issue 2, 1999, Pages 179-194, ISSN 1053-8119, [DOI], [PDF]
1998
Halgren, Eric and Dale, Anders M. Cortical location of implicit repetition effects in a size-judgment task to visually-presented words. NeuroImage.
1997
Fischl, Bruce and Schwartz, Eric L. Learning an integral equation approximation to nonlinear anisotropic diffusion in image processing. Pattern Analysis and Machine Intelligence, IEEE Transactions, [PDF]
Bruce Fischl, Michael A. Cohen, Eric L. Schwartz. The Local Structure of Space-variant Images. Neural Networks, Volume 10, Issue 5, 1997, Pages 815-831, ISSN 0893-6080, [DOI], [PDF]
1993
Grossberg, Stephen; Guenther, Frank; Bullock, Daniel and Greve, Douglas N. Neural representations for sensory-motor control, II: Learning a head-centered visuomotor representation of 3-D target position. Neural Networks, Volume 6, Issue 1, 1993, Pages 43-67, ISSN 0893-6080, [DOI], [PDF]
Greve, Douglas N; Grossberg, Stephen; Guenther, Frank and Bullock, Daniel. Neural representations for sensory-motor control, I: Head-centered 3-D target positions from opponent eye commands. Acta Psychologica. Volume 82, Issues 1–3, 1993, Pages 115-138, ISSN 0001-6918, [DOI], [PDF]
